GPCR viewer

Show info

Indicate what you want to display in your molecular representation using the selection options.

You can choose one of the selections we propose or define a new one using the NGL selection language to limit which atoms/residues are shown.

Protein residues can be indicated as generic GPCR residue numbers (Ballesteros-Weinstein or GPCRdb structure-based numbering).

Visualization and trajectory sharing powered by NGL Viewer and MDsrv.

Flare Plots powered by R. Fonseca and A. J. Venkatakrishnan.

Mouse controls:

Left button hold and move: rotate camera around center.

Left button click: pick atom or distance.

Middle button hold and move: zoom camera in and out.

Middle button click: center camera on atom.

Right button hold and move: translate camera in screen plane.

For more information, see the docs.

Visualization

Delta-type opioid receptor

Selection

Quick selection
Show within Å of
Atom selection
Sequence selection
G
36
S
37
P
38
G
39
A
40
R
41
S
42
A
43
S
44
S
45
L
46
A
47
L
48
A
49
I
50
A
51
I
52
T
53
A
54
L
55
Y
56
S
57
A
58
V
59
C
60
A
61
V
62
G
63
L
64
L
65
G
66
N
67
V
68
L
69
V
70
M
71
F
72
G
73
I
74
V
75
R
76
Y
77
T
78
K
79
M
80
K
81
T
82
A
83
T
84
N
85
I
86
Y
87
I
88
F
89
N
90
L
91
A
92
L
93
A
94
D
95
A
96
L
97
A
98
T
99
S
100
T
101
L
102
P
103
F
104
Q
105
S
106
A
107
K
108
Y
109
L
110
M
111
E
112
T
113
W
114
P
115
F
116
G
117
E
118
L
119
L
120
C
121
K
122
A
123
V
124
L
125
S
126
I
127
D
128
Y
129
Y
130
N
131
M
132
F
133
T
134
S
135
I
136
F
137
T
138
L
139
T
140
M
141
M
142
S
143
V
144
D
145
R
146
Y
147
I
148
A
149
V
150
C
151
H
152
P
153
V
154
K
155
A
156
L
157
D
158
F
159
R
160
T
161
P
162
A
163
K
164
A
165
K
166
L
167
I
168
N
169
I
170
C
171
I
172
W
173
V
174
L
175
A
176
S
177
G
178
V
179
G
180
V
181
P
182
I
183
M
184
V
185
M
186
A
187
V
188
T
189
R
190
P
191
R
192
D
193
G
194
A
195
V
196
V
197
C
198
M
199
L
200
Q
201
F
202
P
203
S
204
P
205
S
206
W
207
Y
208
W
209
D
210
T
211
V
212
T
213
K
214
I
215
C
216
V
217
F
218
L
219
F
220
A
221
F
222
V
223
V
224
P
225
I
226
L
227
I
228
I
229
T
230
V
231
C
232
Y
233
G
234
L
235
M
236
L
237
L
238
R
239
L
240
R
241
S
242
V
243
R
244
L
245
L
246
S
247
G
248
S
249
K
250
E
251
K
252
D
253
R
254
S
255
L
256
R
257
R
258
I
259
T
260
R
261
M
262
V
263
L
264
V
265
V
266
V
267
G
268
A
269
F
270
V
271
V
272
C
273
W
274
A
275
P
276
I
277
H
278
I
279
F
280
V
281
I
282
V
283
W
284
T
285
L
286
V
287
D
288
I
289
D
290
R
291
R
292
D
293
P
294
L
295
V
296
V
297
A
298
A
299
L
300
H
301
L
302
C
303
I
304
A
305
L
306
G
307
Y
308
A
309
N
310
S
311
S
312
L
313
N
314
P
315
V
316
L
317
Y
318
A
319
F
320
L
321
D
322
E
323
N
324
F
325
K
326
R
327
C
328
F
329
R
330
Q
331
L
332
C
333
R
334
K
335
P
336
C
337
G
338
GPCR conserved positions

Highly conserved residues and motifs

Most conserved residues

Most conserved residues

Most conserved residues

Most conserved residues

Analysis

Flare Plots
Hydrogen bonding network
Distance
Select distances from the viewer by clicking on the atoms. Afterwards, import your selections by clicking at the import button. You can also manually introduce the atom indices.
Compute distance between and
In trajectory:
Stride:
RMSD
Trajectory:
Frames:
All
From to
Stride:
Reference: frame from trajectory
Selection:
Protein alpha carbons
Protein CA, CB, C, N, O
Non-hydrogen protein atoms
All protein atoms
Naltrindole
Interaction
Compute interaction between GPCR and
In trajectory:
Stride:
Threshold:
Consider
Hbonds
Trajectory:
Frames:
All
From to
Selection:
Do not include Hbonds between neighbours
All Hydrogen Bonds
Only Side Chain Hydrogen Bonds
Include backbone Hydrogen Bonds
Threshold: %
Salt Bridges
Trajectory:
Frames:
All
From to
Threshold: %