GPCRmd Workbench
Indicate what you want to display in your molecular representation using the selection options of the GPCRmd Viewer.
You can choose one of the selections we propose or define a new one (Customized selection option) using the NGL selection language.
Protein residues can be indicated as generic GPCR residue numbers (Ballesteros-Weinstein or GPCRdb structure-based numbering).
Visualization and trajectory sharing powered by NGL Viewer and MDsrv.
The hydrogen bonding network has been generated using Flare Plots, powered by R. Fonseca and A. J. Venkatakrishnan.
Mutant and variant information obtained from GPCRdb and gnomAD.
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For more information, see the docs.
GPCRmd Viewer

- Trajectory 18324
- Trajectory 18325
- Trajectory 18326
- Distances
- Variants
- Mutations
- None
Selection
GPCRmd Toolkit

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Hydrogen bonds
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- Wernet Nilsson criteria (MDTraj)
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- Summary
Clusters | Highest throughput | |
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Style |
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c1
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Position | GPCRdb num | Variant | Variant ID | AA change | Allele frequency | Allele count | Allele number | Functionally relevant site | SIFT score | PolyPhen-2 score | Unified Impact Prediction | PTM site | Num. associated diseases | Top associated disease | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
3 | T - N | rs746562618 | similar | 0.18 | 0.006 | Benign | 0 | ||||||||
7 | T - S | rs1441554534 | similar | 0.41 | 0 | Benign | 0 | ||||||||
8 | P - S | rs149355664 | changed | 3.180e-05 | 1 | 31404 | 0.13 | 0.232 | Benign | 0 | |||||
8 | P - T | rs149355664 | changed | 0.13 | 0.232 | Benign | 0 | ||||||||
12 | Y - H | rs144707166 | changed | 0.15 | 0 | Benign | 0 | ||||||||
14 | E - D | rs1170265741 | similar | 3.180e-05 | 1 | 31408 | 0.6 | 0.111 | Benign | 0 | |||||
15 | V - A | rs1371072537 | similar | 3.190e-05 | 1 | 31392 | 0.57 | 0.021 | Benign | 0 | |||||
17 | Y - H | rs1314818160 | changed | 0.57 | 0 | Benign | 0 | ||||||||
17 | Y - C | rs759746124 | changed | 0.17 | 0.379 | Benign | 0 | ||||||||
18 | 1x24 | E - K | rs1215961508 | changed | 0.2 | 0.055 | Benign | 0 | |||||||
23 | 1x29 | T - A | rs756098186 | changed | 0.87 | 0 | Benign | 0 | |||||||
26 | 1x32 | R - W | rs367971570 | changed | 0.23 | 0 | Benign | 0 | |||||||
26 | 1x32 | R - Q | rs778561198 | changed | 0.57 | 0.001 | Benign | 0 | |||||||
27 | 1x33 | I - L | rs372491689 | similar | 0.04 | 0.53 | Indef. | 0 | |||||||
31 | 1x37 | V - A | rs779904780 | similar | 0 | 0.393 | Indef. | 0 | |||||||
31 | 1x37 | V - G | rs779904780 | changed | 0 | 0.393 | Indef. | 0 | |||||||
32 | 1x38 | V - A | rs375488620 | similar | 0.02 | 0.524 | Indef. | 0 | |||||||
40 | 1x46 | G - R | rs749741937 | changed | 0 | 0.986 | Damaging | 0 | |||||||
41 | 1x47 | V - L | rs1433309571 | similar | 0.07 | 0.167 | Benign | 0 | |||||||
43 | 1x49 | G - S | rs771532073 | changed | 0 | 0.999 | Damaging | 0 | |||||||
43 | 1x49 | G - R | rs771532073 | changed | 0 | 0.999 | Damaging | 0 | |||||||
52 | 1x58 | G - R | rs937336175 | changed | 0 | 0.996 | Damaging | 0 | |||||||
54 | 1x60 | R - P | rs192933693 | changed | Intracellular binding site | 0 | 0.979 | Damaging | 0 | ||||||
54 | 1x60 | R - W | rs267605624 | changed | 6.370e-05 | 2 | 31384 | Intracellular binding site | 0 | 0.427 | Indef. | 0 | |||
54 | 1x60 | R - Q | rs192933693 | changed | 3.190e-05 | 1 | 31378 | Intracellular binding site | 0 | 0.979 | Damaging | 0 | |||
55 | M - I | rs1241184926 | similar | 0 | 0.985 | Damaging | 0 | ||||||||
56 | T - I | rs368955062 | changed | 6.370e-05 | 2 | 31382 | 0.02 | 0.188 | Indef. | 0 | |||||
57 | R - G | rs142611552 | changed | 0.04 | 0.127 | Indef. | 0 | ||||||||
57 | R - C | rs142611552 | changed | 3.190e-05 | 1 | 31380 | 0.04 | 0.127 | Indef. | 0 | |||||
57 | R - H | rs750225501 | similar | 0.48 | 0.031 | Benign | 0 | ||||||||
58 | 2x37 | T - P | rs758222403 | changed | Intracellular binding site | 0 | 0.997 | Damaging | 0 | ||||||
61 | 2x40 | T - I | rs1470340076 | changed | Intracellular binding site | 0.02 | 0.787 | Indef. | 0 | ||||||
62 | 2x41 | I - F | rs1176402586 | changed | 0 | 0.934 | Damaging | 0 | |||||||
64 | 2x43 | Y - C | rs1400663583 | changed | 3.190e-05 | 1 | 31366 | Intracellular binding site | 0 | 0.994 | Damaging | 0 | |||
68 | 2x47 | A - V | rs1319424621 | similar | 0 | 0.999 | Damaging | 0 | |||||||
70 | 2x49 | A - V | rs147205221 | similar | 0 | 0.99 | Damaging | 0 | |||||||
73 | 2x52 | S - F | rs771316672 | changed | 6.370e-05 | 2 | 31400 | 0.33 | 0.049 | Benign | 0 | ||||
74 | 2x53 | F - L | rs74602258 | changed | 4.619e-03 | 145 | 31394 | Binding site | 0 | 0.732 | Indef. | 0 | |||
75 | 2x54 | T - M | rs144552448 | changed | 3.190e-05 | 1 | 31392 | 0.13 | 0.298 | Benign | 0 | ||||
76 | 2x55 | A - T | rs376191217 | changed | 3.180e-05 | 1 | 31398 | 0.16 | 0.119 | Benign | 0 | ||||
77 | 2x56 | T - I | rs775845526 | changed | Binding site | 0.22 | 0.117 | Benign | 0 | ||||||
78 | 2x57 | L - S | rs1271296719 | changed | 0 | 0.995 | Damaging | 0 | |||||||
82 | 2x61 | I - V | rs553531100 | similar | 3.190e-05 | 1 | 31360 | 0.23 | 0.009 | Benign | 0 | ||||
84 | 2x63 | S - F | rs865881247 | changed | 3.190e-05 | 1 | 31386 | Binding site | 0.06 | 0.285 | Benign | 0 | |||
85 | 2x64 | M - T | rs765433312 | changed | 3.190e-05 | 1 | 31384 | Binding site | 0.56 | 0.006 | Benign | 0 | |||
85 | 2x64 | M - I | rs572059287 | similar | 3.190e-05 | 1 | 31384 | Binding site | 0.31 | 0.003 | Benign | 0 | |||
91 | 23x50 | W - G | rs1365783203 | changed | Binding site | 0 | 0.999 | Damaging | 0 | ||||||
92 | 23x51 | P - S | rs766221747 | changed | 0 | 0.988 | Damaging | 0 | |||||||
92 | 23x51 | P - L | rs1336959824 | changed | 0.11 | 0.4 | Benign | 0 | |||||||
92 | 23x51 | P - T | rs766221747 | changed | 0 | 0.988 | Damaging | 0 | |||||||
98 | 3x25 | C - R | rs754553038 | changed | 3.190e-05 | 1 | 31392 | Binding site | 0.02 | 0.999 | Damaging | Disulfide Bond | 0 | ||
104 | 3x31 | V - A | rs755580928 | similar | 0.02 | 0.033 | Indef. | 0 | |||||||
104 | 3x31 | V - L | rs199862216 | similar | 0.26 | 0.029 | Benign | 0 | |||||||
104 | 3x31 | V - M | rs199862216 | similar | 3.180e-05 | 1 | 31398 | 0.26 | 0.029 | Benign | 0 | ||||
107 | 3x34 | I - V | rs746314594 | similar | 0.09 | 0.044 | Benign | 0 | |||||||
107 | 3x34 | I - S | rs377196157 | changed | 0 | 0.783 | Indef. | 0 | |||||||
108 | 3x35 | N - K | rs747440795 | changed | Binding site | 0 | 0.995 | Damaging | 0 | ||||||
108 | 3x35 | N - S | rs780394996 | similar | 3.190e-05 | 1 | 31360 | Binding site | 0 | 0.951 | Damaging | 0 | |||
110 | 3x37 | F - L | rs1038336613 | changed | Binding site | 0.03 | 0.168 | Indef. | 0 | ||||||
113 | 3x40 | V - I | rs1436884570 | similar | 3.180e-05 | 1 | 31400 | Binding site | 0.23 | 0.315 | Benign | 0 | |||
114 | 3x41 | F - L | rs764117616 | changed | 0 | 0.973 | Damaging | 0 | |||||||
116 | 3x43 | I - V | rs768739192 | similar | 0 | 0.679 | Indef. | 0 | |||||||
116 | 3x43 | I - T | rs776867299 | changed | 0 | 0.988 | Damaging | 0 | |||||||
117 | 3x44 | G - C | rs761977053 | changed | 0.01 | 0.617 | Indef. | 0 | |||||||
119 | 3x46 | I - T | rs1322947944 | changed | 3.180e-05 | 1 | 31404 | 0 | 0.998 | Damaging | 0 | ||||
123 | 3x50 | R - H | rs762976630 | similar | 3.180e-05 | 1 | 31400 | CM: ionic lock | 0.03 | 0.537 | Indef. | 0 | |||
123 | 3x50 | R - C | rs370185503 | changed | CM: ionic lock | 0.06 | 0.638 | Benign | 0 | ||||||
124 | 3x51 | C - Y | rs930013266 | changed | 0 | 1 | Damaging | 0 | |||||||
125 | 3x52 | I - V | rs766456681 | similar | 0.34 | 0.058 | Benign | 0 | |||||||
127 | 3x54 | V - L | rs75905426 | similar | 1.528e-03 | 48 | 31404 | Intracellular binding site | 0 | 0.974 | Damaging | 0 | |||
128 | 3x55 | L - R | rs886383123 | changed | Intracellular binding site | 0.05 | 0.983 | Damaging | 0 | ||||||
131 | 34x51 | V - A | rs759322229 | similar | Intracellular binding site | 0.06 | 0.248 | Benign | 0 | ||||||
133 | 34x53 | A - V | rs767246581 | similar | Intracellular binding site | 0.08 | 0.458 | Benign | 0 | ||||||
136 | 34x56 | H - Y | rs576326023 | changed | Intracellular binding site | 0.04 | 0.768 | Indef. | 0 | ||||||
136 | 34x56 | H - N | rs576326023 | changed | Intracellular binding site | 0.04 | 0.768 | Indef. | 0 | ||||||
137 | 34x57 | R - H | rs144927349 | similar | 2.867e-04 | 9 | 31396 | Intracellular binding site | 0.06 | 0.96 | Indef. | 0 | |||
137 | 34x57 | R - C | rs763580618 | changed | 3.180e-05 | 1 | 31398 | Intracellular binding site | 0 | 0.969 | Damaging | 0 | |||
143 | 4x43 | M - T | rs1374410251 | changed | 0.3 | 0 | Benign | 0 | |||||||
143 | 4x43 | M - L | rs758871498 | similar | 6.370e-05 | 2 | 31396 | 0.02 | 0 | Indef. | 0 | ||||
144 | 4x44 | K - T | rs780662264 | changed | 0.02 | 0.756 | Indef. | 0 | |||||||
147 | 4x47 | V - F | rs201613967 | changed | 0.15 | 0.015 | Benign | 0 | |||||||
147 | 4x47 | V - I | rs201613967 | similar | 2.548e-04 | 8 | 31392 | 0.15 | 0.015 | Benign | 0 | ||||
148 | 4x48 | G - R | rs529128829 | changed | 0.04 | 0.842 | Indef. | 0 | |||||||
149 | 4x49 | P - L | rs1381842916 | changed | 0.48 | 0.029 | Benign | 0 | |||||||
149 | 4x49 | P - T | rs1210873063 | changed | 6.370e-05 | 2 | 31408 | 0.27 | 0.506 | Benign | 0 | ||||
152 | 4x52 | L - F | rs144306253 | changed | 0.22 | 0.232 | Benign | 0 | |||||||
159 | 4x60 | P - S | rs1257523118 | changed | 0 | 0.639 | Indef. | 0 | |||||||
162 | 4x63 | L - H | rs778748775 | changed | 0 | 0.886 | Indef. | 0 | |||||||
167 | V - A | rs1264253969 | similar | 0.24 | 0.013 | Benign | 0 | ||||||||
168 | T - I | rs1191951368 | changed | 0.2 | 0.022 | Benign | 0 | ||||||||
168 | T - A | rs1428770955 | changed | 0.64 | 0.015 | Benign | 0 | ||||||||
172 | G - R | rs1405225762 | changed | 0.09 | 0.927 | Indef. | 0 | ||||||||
173 | D - N | rs752040298 | changed | 1 | 0.001 | Benign | 0 | ||||||||
174 | T - I | rs755457458 | changed | 0.45 | 0.019 | Benign | 0 | ||||||||
175 | Y - H | rs202141015 | changed | 0.4 | 0.02 | Benign | 0 | ||||||||
175 | Y - N | rs202141015 | changed | 0.4 | 0.02 | Benign | 0 | ||||||||
177 | 45x51 | T - N | rs1225401298 | similar | Binding site | 0.33 | 0.021 | Benign | 0 | ||||||
181 | A - S | rs145770786 | changed | 0.79 | 0.006 | Benign | 0 | ||||||||
181 | A - T | rs145770786 | changed | 0.79 | 0.006 | Benign | 0 | ||||||||
184 | G - D | rs1208579377 | changed | 0.02 | 0.678 | Indef. | 0 | ||||||||
186 | T - N | rs745804962 | similar | 3.190e-05 | 1 | 31392 | 0.23 | 0.119 | Benign | 0 | |||||
189 | E - D | rs1215527370 | similar | 0.06 | 0.084 | Benign | 0 | ||||||||
192 | K - N | rs1379290418 | changed | 3.180e-05 | 1 | 31398 | 0.22 | 0.02 | Benign | 0 | |||||
196 | 5x34 | T - I | rs200923071 | changed | 6.370e-05 | 2 | 31400 | 0.22 | 0.038 | Benign | 0 | ||||
196 | 5x34 | T - S | rs200923071 | similar | 0.22 | 0.038 | Benign | 0 | |||||||
197 | 5x35 | M - V | rs371397137 | similar | 0.65 | 0.001 | Benign | 0 | |||||||
197 | 5x35 | M - L | rs371397137 | similar | 0.65 | 0.001 | Benign | 0 | |||||||
205 | 5x43 | R - W | rs761462518 | changed | Binding site | 0.07 | 0.299 | Benign | 0 | ||||||
205 | 5x43 | R - Q | rs138440882 | changed | 2.548e-04 | 8 | 31392 | Binding site | 0.07 | 0.919 | Indef. | 0 | |||
208 | 5x46 | I - S | rs1452767722 | changed | 0 | 0.906 | Indef. | 0 | |||||||
213 | 5x50 | P - L | rs141356657 | changed | 1.274e-04 | 4 | 31388 | 0.03 | 0.991 | Damaging | 0 | ||||
216 | 5x53 | I - T | rs1159394552 | changed | 3.190e-05 | 1 | 31388 | 0.25 | 0.113 | Benign | 0 | ||||
222 | 5x59 | G - R | rs531939913 | changed | 0 | 0.998 | Damaging | 0 | |||||||
222 | 5x59 | G - E | rs1317950961 | changed | 0 | 0.996 | Damaging | 0 | |||||||
223 | 5x60 | L - F | rs1216306730 | changed | 0.01 | 0.99 | Damaging | 0 | |||||||
224 | 5x61 | I - V | rs1284273058 | similar | Intracellular binding site | 0.1 | 0.361 | Benign | 0 | ||||||
226 | 5x63 | A - V | rs907762465 | similar | 0.13 | 0.119 | Benign | 0 | |||||||
227 | 5x64 | K - R | rs1222700986 | similar | Intracellular binding site | 0.18 | 0.232 | Benign | 0 | ||||||
228 | 5x65 | I - V | rs1487218201 | similar | Intracellular binding site | 0.07 | 0.124 | Benign | 0 | ||||||
231 | 5x68 | K - T | rs757476454 | changed | Intracellular binding site | 0.08 | 0.082 | Benign | 0 | ||||||
232 | G - S | rs1408592049 | changed | 3.190e-05 | 1 | 31396 | Intracellular binding site | 0.14 | 0.033 | Benign | 0 | ||||
232 | G - R | rs1408592049 | changed | Intracellular binding site | 0.14 | 0.033 | Benign | 0 | |||||||
232 | G - V | rs779046091 | changed | Intracellular binding site | 0.01 | 0.616 | Indef. | 0 | |||||||
238 | 6x32 | R - L | rs199892175 | changed | Intracellular binding site | 0 | 0.977 | Damaging | 0 | ||||||
238 | 6x32 | R - S | rs866790761 | changed | Intracellular binding site | 0.03 | 0.643 | Indef. | 0 | ||||||
238 | 6x32 | R - H | rs199892175 | similar | 3.180e-05 | 1 | 31406 | Intracellular binding site | 0 | 0.977 | Damaging | 0 | |||
240 | 6x34 | L - F | rs1040331070 | changed | 3.180e-05 | 1 | 31412 | 0.46 | 0.019 | Benign | 0 | ||||
241 | 6x35 | R - W | rs772024580 | changed | 3.180e-05 | 1 | 31410 | 0.11 | 0.344 | Benign | 0 | ||||
241 | 6x35 | R - Q | rs746551181 | changed | 6.370e-05 | 2 | 31410 | 0.06 | 0.812 | Benign | 0 | ||||
243 | 6x37 | L - F | rs1300463753 | changed | Intracellular binding site | 0.04 |