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Simulation report

Technical information

General information

Name: Chimera protein of human 5-hydroxytryptamine receptor 2b and e. coli soluble cytochrome b562 (apoform) (apoform)

PDB id: 5TVN

Activation state: Intermediate

Description: Classical unbiased (NVT ensemble) complex flexibility assay.

Submitted by: GPCRmd community

System setup

Solvent type: TIP3P

Membrane type: Homogeneous

Membrane composition: POPC

Ionic composition: Sodium ion (156 mM), Chloride (175 mM)

Number of molecules:

Water: 17442

POPC: 170

Chloride: 55

Sodium ion: 49

5-hydroxytryptamine receptor 2B: 1

Total number of atoms: 80202

Simulation details

Software and version: ACEMD3, GPUGRID

Forcefield and version: CHARMM, c36 Jul 2020

Time step : 4.0 fs

Delta : 0.2 ns

Replicates: 3

Accumulated simulation time: 1.5 µs

Additonal parameters: Available at "Simulation protocol & starting files"

Simulation components

Receptor

Visualization and trajectory sharing powered by NGL viewer and MDSrv

Open with GPCRmd Workbench

Mutations

No mutations found



Other molecules



Water

Specific State ID: 5151

(17442 molecules)

H2O


POPC

Specific State ID: 5152

(170 molecules)


Sodium ion

Specific State ID: 5153

(49 molecules)

Na+


Chloride

Specific State ID: 5154

(55 molecules)

Cl-


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