Simulation report
Technical information
General information
Name: Sphingosine 1-phosphate receptor 1 in complex with w146
PDB id: 3V2Y.A
Activation state: Inactive
Description: Classical unbiased (NVT ensemble) complex flexibility assay.
Submitted by: GPCRmd community
System setup
Solvent type: TIP3P
Membrane type: Homogeneous
Membrane composition: POPC
Ionic composition: Sodium ion (161 mM), Chloride (227 mM)
Number of molecules:
Water: 17594
POPC: 169
Chloride: 72
Sodium ion: 51
W146: 1
Sphingosine 1-phosphate receptor 1: 1
Total number of atoms: 80762
Simulation details
Software and version: ACEMD, GPUGRID
Forcefield and version: CHARMM, 36m Feb 2016
Time step : 4.0 fs
Delta : 0.2 ns
Replicates: 3
Accumulated simulation time: 1.5 µs
Additonal parameters: Available at "Simulation protocol & starting files"
References
Ismael Rodríguez-Espigares, Mariona Torrens-Fontanals, et al.. 2020. GPCRmd uncovers the dynamics of the 3D-GPCRome. Nature methods 17 (8). doi: 10.1038/s41592-020-0884-y. (http://doi.org/10.1038/s41592-020-0884-y)
Simulation components
Ligands
Receptor
Mutations
No mutations found
Other molecules
