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Simulation report

Technical information

General information

Name: Human a2a adenosine receptor t4l chimera (apoform)

PDB id: 5WF5

Activation state: Intermediate

Description: Classical unbiased (NVT ensemble) complex flexibility assay.

Submitted by: GPCRmd community

System setup

Solvent type: TIP3P

Membrane type: Homogeneous

Membrane composition: POPC

Ionic composition: Sodium ion (157 mM), Chloride (188 mM)

Number of molecules:

POPC: 190

Sodium ion: 62

Chloride: 74

Water: 21920

Unii-8l3oaj1r5a:

Adenosine receptor A2a: 1

Total number of atoms: 96414

Simulation details

Software and version: ACEMD3, GPUGRID

Forcefield and version: CHARMM, c36 Jul 2020

Time step : 4.0 fs

Delta : 0.2 ns

Replicates: 3

Accumulated simulation time: 1.5 µs

Additonal parameters: Available at "Simulation protocol & starting files"



Simulation components

Ligands

Orthosteric ligand(s)

Unii-8l3oaj1r5a

(0 molecules)


Receptor

Visualization and trajectory sharing powered by NGL viewer and MDSrv

Open with GPCRmd Workbench

Mutations

No mutations found



Other molecules



POPC

Specific State ID: 5152

(190 molecules)


Sodium ion

Specific State ID: 5153

(62 molecules)

Na+


Chloride

Specific State ID: 5154

(74 molecules)

Cl-


Water

Specific State ID: 5151

(21920 molecules)

H2O


Unii-8l3oaj1r5a (orthosteric lig.)

Specific State ID: 5199