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Simulation report and files

General information

Name: Nucleoprotein

Included proteins: N

Uniprot ID: P0DTC9

Species: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2)

PDB ID: 6VYO

Submitted by: Exscalate4CoV - CINECA

Submission date: May 05, 2021

System setup

Ligands: None

Membrane composition: None

Solvent type: None

Total number of atoms: 7782

Simulation details

Software and version: GROMACS 2020.2

Forcefield and version: AMBER 99

Time step : 0.2 fs

Delta : 2.0 ns

Replicates: 1

Accumulated simulation time: 45.4880 µs



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Nucleoprotein ( 6VYO)

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Hydrogen bonds

RMSD
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Protein alpha carbons
Protein CA, CB, C, N, O
Non-hydrogen protein atoms
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RMSF
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Selection:
Protein alpha carbons
Protein CA, CB, C, N, O
Non-hydrogen protein atoms
All protein atoms
Variant impact
No variants found in the sequence of this structure.